Past meetings

Platform

11 Jan 2019

Fall Meeting of the Netherlands Proteomics Platform

22^nd January 2018
 

Congrescentrum 'In De Driehoek' (www.indedriehoek.nl | near Utrecht CS)

Willemsplantsoen 1c

3511 LA Utrecht

To register, please send an email to NetherlandsProteomicsPlatform@gmail.com

Program theme: 'Modified proteins and protein variants in health and disease'

09.00 - 09.30           REGISTRATION & COFFEE

09.30 - 09.35           Welcome

Jeroen Demmers (NPP steering committee | Erasmus University Medical Center, Rotterdam)

09.35 - 10.30           KEY NOTE LECTURE | MS-based immunopeptidomics - accelerating the development of cancer immunotherapy

Michal Bassani-Sternberg (Centre Hospitalier Universitaire Vaudois (CHUV), Lausanne)

10.30 - 11.00           Proteogenomic analysis of alternative splicing in cancer

Gosia Komor (NKI & VU University Medical Center, Amsterdam)

11.00 - 11.30           Monitoring the ubiquitinome upon malfunctioning of the proteasome
                                Lennart van der Wal (Erasmus University Medical Center, Rotterdam)

11.30 - 12.00           Proteogenomics data integration to reveal the molecular mechanism of COPD

Peter Horvatovich or Victor Guryev (University of Groningen, Groningen)

12.00 - 13.30           LUNCH | 5-minute vendor pitches starting at 13.00 h

13.30 - 14.00           TBA (PTMs)

                                Leonie Kollenstart (Leiden University Medical Center, Leiden)

14.00 - 14.30           The role of protein synthesis and phosphorylation in synaptic plasticity

Charlotte van Gelder (Utrecht University, Utrecht)

14.30 - 15.00           Open slot for selected talk    

TBA

15.00 - 15.30          TEA BREAK

15.30 - 16.00           Data-dependent versus independent MS for comprehensive tumor proteome profiling

Davide Chiasserini (VU University Medical Center, Amsterdam)

16.00 - 17.00           KEY NOTE LECTURE | A proteomic view on cellular signaling and chromatin regulation

Jeroen Krijgsveld (Deutsches Krebsforschungszentrum (DKFZ), Heidelberg)

17.00 - 18.00           CLOSURE & DRINKS

16^th Fall Meeting of the Netherlands Proteomics Platform

14 December 2016 -  Auditorium

Vrije Universiteit, Amsterdam

NPP Program

'Next-generation proteomics applications'

9.00-9.30         Registration and coffee

9.30- 9.35        Welcome

Connie Jimenez (NPP steering committee, VUmc)

9.35- 9.45        Update EuPA 

Meike de Wit (NPP representative EuPA Young Proteomics Investigator Club)

9.45-10.15       Drug Resistance Assessed by Multi-Proteomics Approaches

Simone Lemeer, UU, Utrecht

10.15-10.45     HLA-peptidomics, applications in T-cell mediated therapy

                        Peter van Veelen, LUMC, Leiden

KEY NOTE LECTURE

10.45-11.45     Proteogenomics of cancer

Bing Zhang, Baylor College of Medicine, Houston, Texas

11.45-13.00     LUNCH BREAK

This year it will be held at the Leiden University Medical Center in Leiden on Friday November 13^th 2015.

Registration and submission of abstracts for an oral presentation (max 300 words) can be sent to P.Hensbergen@lumc.nl. Please put 'NPP Fall Meeting' in the subject heading. 

Program 

9.00-9.40           Registration and coffee

9.40- 9.45          Welcome

Paul Hensbergen (NPP steering committee, LUMC)

9.45-10.10         Synaptic Proteomics using SWATHTM of Rodent versus Primate brain

Nikhil J. Pandya, Vrije University, Amsterdam

10.10-10.35       Peptide-mediated 'miniprep' isolation of extracellular vesicles is suitable for high-throughput proteomics; method evaluation and application in colon cancer

                        Meike de Wit, VUmc, Amsterdam

10.35-11.00       PhosphoPath: Visualization of Phosphosite-centric Dynamics in Temporal

Molecular Networks

Linsey Raaijmakers, Utrecht University

11.00-11.30       Coffee/tea break

11.30-12.00       Targeting resistance to proteasome inhibitor therapy: a metabolomics approach

                        Celia Berkers, Utrecht University

12.00-12.30       Proteasome malfunctioning and ubiquitinome dynamics

                        Jeroen Demmers, ErasmusMC, Rotterdam

12.30-13.30       LUNCH

Microbial Proteomics

KEY NOTE LECTURE

13.30-14.30   Quantitative (phospho)proteomics in analysis of microbial regulatory networks

Dr. B. Macek, Director Proteome Center Tubingen, Germany

14.30-15.00       Coffee break

15.00-15.25       Rapid and strong induction of eEF2 phosphorylation during viral infection

Emmely Treffers, LUMC, Leiden

15.25-15.50       Absolute quantification of proteins in the spores of the pathogenic food spoiler Bacillus cereus

Sacha Stelder, University of Amsterdam

15.50-16.15       Proteomic analyses of (antibiotic resistant) clinical bacterial isolates

Frank Fleurbaaij, LUMC, Leiden

16.15-16.40       Clostridium difficile cell surface proteins involved in the regulation of adhesion

Hans van Leeuwen, LUMC, Leiden

16.40-               Drinks

Fall Meeting of the Netherlands Proteomics Platform
November 14, 2014

Location: Erasmus MC Rotterdam - onderwijscentrum, Prof. Andries Queridozaal (lectures) and Espresso bar (registration, coffee, lunch, sponsors)

Program 'Implications of the draft human proteome and subproteome in health and disease'

9.00-9.40           Registration and coffee

9.40- 9.45          Welcome

Arzu Umar (NPP steering committee, Erasmus MC)

9.45-10.00         Update EuPA, HUPO

Connie Jimenez (NPP steering committee, VUmc)

KEY NOTE LECTURE

10.00-11.00     Implications of the human draft proteome in health and disease

Bernhard Kuster (Technical University Munich, Munich, Germany)

11.00-11.30       COFFEE/ TEA BREAK

11.30-12.00       Towards a comprehensive characterization of colorectal cancer-associated glycosylation changes

Stefanie Holst (Leiden University Medical Center, Leiden, The Netherlands)

12.00-12.30       A 4-protein profile predicts tamoxifen treatment outcome in recurrent ER+ breast cancer

Tommaso De Marchi (Erasmus University Medical Center, Rotterdam, The Netherlands)

12.30-13.00       Panel of regulated proteins in serum for diagnostics of cervical cancer and cervical intraepithelial neoplasias and follow-up treatment

Alexander Boichenko (University of Groningen, Groningen, The Netherlands)

13.00-14.00       LUNCH

14.00-14.30       De Novo discovery of phenotypic intra-tumor heterogeneity using IMS

Benjamin Balluff (Leiden University Medical Center, Leiden, The Netherlands)

14.30-15.00       Transfer of regulatory protein networks via extracellular vesicles as a possible mechanism of mediating apoptosis-resistance

A. Wojtuszkiewicz (VU University Medical Center, Amsterdam, The Netherlands)

15.00-15.30       Changes in the human hippocampal proteome during Alzheimer’s disease

Saskia van der Vies (VU University Medical Center, Amsterdam, The Netherlands)

15.30-16.00       COFFEE/ TEA BREAK

KEY NOTE LECTURE

16.00-17.00       PTMs in the human brain

Martin Larsen (University of Southern Denmark, Odense, Denmark)

17.00-18.00       DRINKS

13th NPP Fall meeting

9.00-9.30         Registration and coffee

9.30- 9.45        Welcome, update EuPA, HUPO

Connie Jimenez (NPP steering committee, VUmc)

9.45-10.15       Next generation proteomics: an integrative transcriptome and proteome study of rat tissues from different genetic backgrounds

Teck Yew Low, Utrecht University, Utrecht

10.15-10.45     AMPA receptor interactome: Identification of true protein-protein interactions

Nikhil Pandya, Vrije Universiteit, Amsterdam

10.45-11.15     COFFEE/ TEA BREAK

11.15-11.45     Quantitative protemics, to label or not to label?

NQ Liu, Erasmus Medical Center, Rotterdam

11.45-12.15     Disease-related N-glycoproteome of Arabidopsis infected by downy mildew

                        Dmitry Lapin, Plant-Microbe Interactions group, Utrecht University

12.15-12.45     Protein biomarkers for cervical cancer: from shotgun to targeted MS quantification

Alexander Boichenko, University of Groningen, Groningen

12.45-13.45     LUNCH

13.45-14.15     Label-free phosphoproteomics of cancer cells

Sander Piersma, VU University Medical Center, Amsterdam

14.15-14.45     A novel secreted metalloprotease from Clostridium difficile cleaves cell surface LPXTG-proteins involved in adhesion

Paul Hensbergen, LUMC, Leiden

KEY NOTE LECTURE

14.45-15.45     New developments in targeted mass spectrometry: from MRM to PRM and SWATH to antibody-based analyses

Jan van Oostrum, CRP-Santé and Luxembourg University, Luxembourg

KEY NOTE LECTURE

15.45-16.45     Proteogenomic analysis of TCGA colorectal carcinomas

Robbert Slebos, Vanderbilt University, Nashville, USA

16.45-18.00     DRINKS

To register, please send an email to Dr. Connie Jimenez: c.jimenez@vumc.nl
 

Fall Meeting Netherlands Proteomics Platform 

To register, send an email to c.jimenez@vumc.nl

Oct 15, 2010, Fall Meeting Netherlands Proteomics Platform
Topic Targeted proteomics using multiple reaction monitoring

Oct 15, 2010, Fall Meeting Netherlands Proteomics Platform

Topic Targeted proteomics using multiple reaction monitoring. Program
Location: Uithof in Utrecht. Routedescription
Slots open for orals (all topics)!
To attend or present, please send an email to Dr. Monique Slijper (m.slijper@uu.nl )

NPP Voorjaarsmeting, 11 april 2008, VUMC Amsterdam,

Lecture Hall De Maas Morning Workshop ‘Mining of proteomics data: From discovery towards biological insight’ Contributions on Bioinformatics tools including Cytoscape and Ingenuity. Please sign up by sending an email to c.jimenez@vumc.nl
NB In the afternoon of April 11 there is a separate proteomics symposium hosted by VUmc and Applied Biosystems: please see http://www.proteomics.nl/frs1/links.html

Programme download programme

09.30-10.30      Registration and coffee

10.30-10.35      Welcome
                         Connie Jimenez (NPP steering committee)

10.35-11.00      Overview strategies for mining proteomics data
                         Connie Jimenez, OncoProteomics Laboratory, VUmc

11.00-12.00      Building Disease Models from Transcriptomic, Proteomic and Metabolomic Data- Ingenuity demo
                         Adam Corner, Ingenuity Systems
 
12.00-13.00      LUNCH

13.00-14.00      'Pathway analysis in cancer'- Cytoscape demo
                         Rogier Versteeg, AMC

Amsterdam NPP Workshop End

14.00-17.00      Mini-symposium ‘From Discovery through Validation towards Biological Insight’ co-organized by VUmc & Applied Biosystems (see www.oncoproteomics.nl for program)